BioMedAI TWINNING

Future of explainable artificial intelligence research in healthcare

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Masaryk University Joins the RI-SCALE Project: A New EU-Funded Initiative Unlocking RI Potential withMasaryk University Joins the RI-SCALE Project: A New EU-Funded Initiative Unlocking RI Potential with Scalable AI and Data Scalable AI and Data

Masaryk University Joins the RI-SCALE Project: A New EU-Funded Initiative Unlocking RI Potential withMasaryk University Joins the RI-SCALE Project: A New EU-Funded Initiative Unlocking RI Potential with Scalable AI and Data Scalable AI and Data

RI-SCALE marks a significant step toward the next generation of data-driven research

Masaryk University is proud to partner in the newly launched RI-SCALE project (Unlocking RI Potential with Scalable AI and Data), funded under the Horizon Europe program. This ambitious project brings together 29 partners across Europe to address the challenges of effective research data exploitation. Coordinated by the EGI Foundation, RI-SCALE officially started on March 1, 2025, and will run until February 2028 (36 months). The project aims to develop cutting-edge Data Exploitation Platforms (DEPs) to enhance the accessibility, usability, and impact of research data across multiple scientific domains.

Beyond Occlusion: The BioMedAI Research Team to Present at ISBI 2025

Beyond Occlusion: The BioMedAI Research Team to Present at ISBI 2025

The paper "Beyond Occlusion: In Search for Near Real-Time Explainability of CNN-Based Prostate Cancer Classification" has been accepted for presentation at the prestigious 2025 IEEE International Symposium on Biomedical Imaging (ISBI 2025). This conference, taking place April 14–17, 2025, in Houston, TX, USA, is one of the leading events in biomedical imaging, bringing together cutting-edge advancements in medical image analysis, artificial intelligence, and computational imaging.

Innovative RI-SCALE Project Secures Funding under Horizon Europe

Innovative RI-SCALE Project Secures Funding under Horizon Europe

The RI-SCALE project, set to run for 36 months, has been awarded funding under the prestigious Horizon Europe program. Titled "Unlocking RI Potential with Scalable AI and Data," the project aims to significantly advance the integration of data and artificial intelligence (AI) in scientific research. One of the project partners is Masaryk University, represented through the BioMedAI initiative, with members from both the Faculty of Informatics and the Institute of Computer Science. The principal investigator for Masaryk University is Associate Professor RNDr. Tomáš Brázdil, Ph.D., from the Faculty of Informatics.

XAI Winter School 2025 Successfully Connected Brno and Graz

XAI Winter School 2025 Successfully Connected Brno and Graz

XAI Winter School 2025 Successfully Connected Brno and Graz

From January 6 to 10, 2025, the Masaryk Memorial Cancer Institute and the Faculty of Informatics at Masaryk University in Brno, in collaboration with the Medical University of Graz, hosted the Winter School focused on using Artificial Intelligence (AI) in digital pathology. Following the success of the Summer School in September 2024, this event attracted 26 participants, far exceeding the organizers' expectations and highlighting the growing importance of AI in medicine.

BioMedAI representatives at the 2024 Brno Oncology Days

BioMedAI representatives at the 2024 Brno Oncology Days

The 2024 Brno Oncology Days attracted a record 2,510 attendees and offered a rich program focused on innovations in oncology. The topics addressed the latest advancements, including the use of artificial intelligence (AI).

A Glimpse into the Future of Digital Pathology and Medical Data
The conference featured contributions from experts in AI applications for oncology and digital pathology. The BioMedAI representatives also contributed to the conference program with their expertise.

Winter School XAI 2025: Registration Now Open!

Winter School XAI 2025: Registration Now Open!

At the beginning of the new year, the Winter School XAI 2025 will occur from January 6 to 10, 2025, at the Masaryk Oncology Institute in Brno and the Medical University of Graz. This unique program will provide practical insights into the latest artificial intelligence (AI) advancements in digital pathology.

Participants will engage in training sessions led by experts, covering essential topics such as AI-assisted diagnostics, the significance of explainability in medical AI, and certification processes according to the In Vitro Diagnostic Regulation (IVDR). The program also includes a practical component, allowing participants to work directly with digital pathology data, including whole-slide images and clinical data.

BioMedAI Team Showcases Research at the first ASDP Congress in Seoul

BioMedAI Team Showcases Research at the first ASDP Congress in Seoul

Representatives of the BIoMedAI project participated in the 1st Annual Congress of the Asian Society of Digital Pathology (ASDP), which took place from October 2 to 4, 2024, in Seoul, South Korea.

The delegation included Vít Musil, the team leader from the RationAI lab and
Assistant professor at the Department of Computer Science, along with PhD student Adam Bajger and master's student Adam Kukučka, who presented the results of his research. This research, initially part of his bachelor’s thesis, is now under review.

Czech Open Source Policy Forum Highlights Contributions from BioMedAI

Czech Open Source Policy Forum Highlights Contributions from BioMedAI

On April 24, 2024, the Czech Open Source Policy Forum took place in Brno, featuring prominent discussions on the sustainability of open-source projects within the public sector and academia. Among the attendees was Petr Holub, a representative from the BioMedAI project. He actively participated in discussions focused on the importance of community engagement for the sustainability of these initiatives. Holub's insights contributed to a deeper understanding of how collaborative efforts can enhance the longevity and impact of open-source projects.

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Publications

Provenance of specimen and data – A prerequisite for AI development in computational pathology

December 2023

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Shedding light on the black box of a neural network used to detect prostate cancer in whole slide images by occlusion-based explainability

December 2023

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Privacy Risks of Whole-Slide Image Sharing in Digital Pathology 

May 2023

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AI for life: Trends in artificial intelligence for biotechnology

May 2023

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“The increasing demand for sophisticated clinical diagnostics leads to the need for semi-automatic systems using AI and machine learning to speed up the diagnosis process, and the BioMedAI project aims to establish close cooperation between computer science and clinical experts to develop explainable and trustworthy AI solutions through virtual training, workshops, and summer schools, while also increasing the visibility and presence of explainable AI research in healthcare.”

Petr Holub, Project Lead

Publications

Provenance of specimen and data – A prerequisite for AI development in computational pathology

December 2023

Get more info

Shedding light on the black box of a neural network used to detect prostate cancer in whole slide images by occlusion-based explainability

December 2023

Get more info

Privacy Risks of Whole-Slide Image Sharing in Digital Pathology 

May 2023

Get more info

AI for life: Trends in artificial intelligence for biotechnology

May 2023

Get more info

“The increasing demand for sophisticated clinical diagnostics leads to the need for semi-automatic systems using AI and machine learning to speed up the diagnosis process, and the BioMedAI project aims to establish close cooperation between computer science and clinical experts to develop explainable and trustworthy AI solutions through virtual training, workshops, and summer schools, while also increasing the visibility and presence of explainable AI research in healthcare.”

Petr Holub, Project Lead

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